Publications

Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC, Vogel JP (2014) Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. Plant Journal, doi: 10.1111/tpj.12569.

Matos DA, Cole BJ, Whitney IP, MacKinnon KJ-M, Kay SA, Hazen SP (2104) Daily changes in temperature, not the circadian clock, regulate growth rate in Brachypodium distachyon. PLoS ONE. 9(6): e100072.

Young Y, Chuck G, Tyler L. (2014) Bioenergy-related traits and model system. In Compendium of Bioenergy Plants: Corn, SL Goldman and C Kole, eds (CRC Press), pp. 118-168.

Tyler L, Fangel JU, Fagerström AD, Steinwand MA, Raab TK, Willats WGT, Vogel JP (2014) Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines. BMC Plant Biology, 14: 25.

Matos DA, Whitney IP, Harrington MJ, Hazen SP (2013) Cell walls and the developmental anatomy of the Brachypodium distachyon stem internode. PLoS ONE, 8 (11): e80640.

Araneda L, Sim S-C, Bae J-J, Chakraborty N, Curley J, Chang T, Inoue M, Warnke S, Jung J (2013) Comparative genome analysis between Agrostis stolonifera and members of the Pooideae subfamily, including Brachypodium distachyon. PLoS ONE 8(11): e79425.

Handakambura PP, Matos DA, Osmont KS, Harrington MJ, Heo K, Kafle K, Kim SH, Baskin TI, Hazen SP (2013) Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls. BMC Plant Biology,13: 131.

Trabucco GM, Matos DA, Lee SJ, Saathoff AJ, Priest HD, Mockler TC, Sarath G, Hazen, S.P. 2013. Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon. BMC Biotechnology. 13: 61.

Bragg JN*, Tyler L*, Vogel JP. 2012 Brachypodium distachyon, a model for bioenergy grasses. In Handbook of Bioenergy Crop Plants, C. Kole, C.P. Joshi, and D.R. Shonnard, eds (Taylor & Francis Group), pp. 593-618.

Harrington MJ, Mutwil M, Barriere Y, Sibout R. 2012. Molecular biology of lignification in grasses. In Advanced in Bioloigcal Research – Lignins: Biosynthesis, Biodegradation, and Bioengineering – Volume 61. C. Jouanin and L. Lapierre, eds (Academic Press) pp. 75-105.

Matos DA. 2012. Rhythmic growth and vascular development in Brachypodium distachyon (Master's Thesis). Molecular and Cellular Biology, University of Massachusetts, Amherst MA.

Trabucco GM. 2012. Downregulation of Cinnamyl alcohol dehydrogenase or Caffeic acid O-methyltransferase leads to improved biological conversion efficiency in Brachypodium distachyon (Master's Thesis). Molecular and Cellular Biology, University of Massachusetts, Amherst MA.

Yordem BK. 2012. Establishing Brachypodium distachyon as a new model system for understanding iron homeostasis in grasses (Doctoral Dissertation). Plant Biology, University of Massachusetts, Amherst MA.

Lee SJ, Warnick TA, Pattathil S, Alvelo-Maurosa JG, Serapiglia MJ, McCormick H, Brown V, Young NF, Schnell DJ, Smart LB, Hahn MG, Pedersen JF, Leschine SB, Hazen SP. 2012. Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality. Biotechnology for Biofuels 5: 5.

Yordem BK, Conte SS, Ma JF, Yokosho K, Vasques KA, Gopalsamy SN, Walker EL. 2011. Brachypodium distachyon as a new model system for understanding iron homeostasis in grasses: phylogenetic and expression analysis of Yellow Stripe Like (YSL) transporters. Annals of Botany, 108: 821-833.

Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, Caicedo AL, Gao C, Gu Y, Hazen SP, Holt III BF, Hong S-Y, Jordan M, Manzaneda AJ, Mitchell-Olds T, Mochida K, Mur LAJ, Park C-M, Sedbrook J, Watt M, Zheng SJ, Vogel JP. 2011. Brachypodium as a model for the grasses: Today and the future. Plant Physiology, 157: 3-13.

Araneda L. 2011. Comparative genome analysis between Agrostis stolonifera and members of the Pooideae subfamily, including Brachypodium distachyon (Master's Thesis). Plant, Soil, and Insect Sciences, University of Massachusetts, Amherst MA.

Tyler L, Bragg JN, Wu J, Yang X, Tuskan G, Vogel JP. 2010. Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon. BMC Genomics, 11: 600.

The International Brachypodium Initiative. 2010. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463: 763-768.

Garvin DF, Gu Y, Hasterok R, Hazen SP, Jenkins G, Mockler TP, Mur L, Vogel JP. 2008. Development of genetic and genomic resources for Brachypodium distachyon, a new model system for grass crop research. Plant Genome, 8: S-69-S-84.