Holden Lab: Selected Publications

Hu, Y. and J.F Holden, (2006) Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate. J. Bacteriol. 188: 4350-4355

Feinberg, L.F. and J.F. Holden, (2006) Characterization of dissimilatory Fe(III) versus NO3– reduction in the hyperthermophilic archaeon Pyrobaculum aerophilum. J.Bacteriol. 188:525-531.

Holden, J.F. and L.F. Feinberg, (2005) Microbial iron respiration near 100°C, pp. 57-66. In Richard B. Hoover, Gilbert V. Levin, Alexei Y. Rozanov, G. Randall Gladstone (ed), Astrobiology and Planetary Missions, Proceedings of SPIE vol. 5906, International Society of Optical Engineering, Bellingham, WA.

Holden, J.F., and R.M. Daniel (2004) Upper temperature limit of life based on hyperthermophile culture experiments and field observations, pp. 13-24. In W.S.D. Wilcock, E.F. DeLong, D.S. Kelley, J.A. Baross, and C. Cary (ed). The Subsurface Biosphere at Mid-Ocean Ridges, Geophysical Monograph vol. 144, American Geophysical Union, Washington, D.C.

Daniel, R.M., J.F. Holden, R. van Eckert, J. Truter and D.A. Cowan (2004) The stability of biomolecules and the implications for life at high temperatures, pp. 25-39. In W.S.D. Wilcock, E.F. DeLong, D.S. Kelley, J.A. Baross, and C. Cary (ed), The Subsurface Biosphere at Mid-Ocean Ridges, Geophysical Monograph vol. 144, American Geophysical Union, Washington, D.C.

Holland, M.E., J.A. Baross, and J.F. Holden (2004) Illuminating subseafloor ecosystems using microbial tracers, pp. 291-303. In W.S.D. Wilcock, E.F. DeLong, D.S. Kelley, J.A. Baross, and C. Cary (ed), The Subsurface Biosphere at Mid-Ocean Ridges, Geophysical Monograph vol. 144, American Geophysical Union, Washington, D.C.

Holden, J.F., and M.W.W. Adams (2003) Microbe-metal interactions in marine hydrothermal environments. Curr. Opin. Chem. Biol. 7:160-165.

Lim, H., L.G. Hays, J. Eng, S.L. Tollaksen, C.S. Giometti, J.F. Holden, M.W.W. Adams, C.I. Reich, G.J. Olsen, and J.R. Yates III (2003) Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to µLC-ESI tandem mass spectrometry. J. Am. Soc Mass Spectrom. 14:957

Holden, J.F., and M.W.W. Adams (2002) Unique aspects of the hyperthermophile proteome. In Extremophiles (Gerday, C., and N. Glansdorff, eds.), in Encyclopedia of Life Support Systems (EOLSS), developed under the auspices of the UNESCO, Eolss Publishers, Oxford, UK [http://www.eolss.net].

Holden, J.F., F.L. Poole, II, S.L. Tollaksen, C.S. Giometti, H. Lim, J.R. Yates, III, and M.W.W. Adams (2001) Identification and prediction of membrane proteins in the hyperthermophilic archaeon Pyrococcus furiosus using proteomics and prediction programs. Comp. Funct. Genom. 2:275-288.

Holden, J.F., K. Takai, M. Summit, S. Bolton, J. Zyskowski, and J.A. Baross (2001) Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean. FEMS Microbiol. Ecol. 36:51-60.

Adams, M.W.W., J.F. Holden, A. Lal Menon, G.J. Schut, A.M. Grunden, C. Hou, A.M. Hutchins, F.E. Jenney, Jr., C. Kim, K. Ma, G. Pan, R. Roy, R. Sapra, S.V. Story, and M.F.J.M. Verhagen (2001) A key role for sulfur in peptide metabolism and in the regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183:716-724.

Hutchins, A. M., J. F. Holden, and M. W. W. Adams (2001) Phosphoenolpyruvate synthetase from the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183:709-715.

Holden, J.F., M.W.W. Adams, and J.A. Baross (2000) Heat-shock response in hyperthermophilic microorganisms, pp. 663-670. In Proceedings from the Eighth International Symposium on Microbial Ecology (Bell, C.R., M. Brylinsky, and P. Johnson-Green, eds.), Atlantic Canada Society for Microbial Ecology, Halifax, Canada.

Holden, J.F., M. Summit, and J.A. Baross (1998) Thermophilic and hyperthermophilic microorganisms in 3-30ºC hydrothermal fluids following a deep-sea volcanic eruption. FEMS Microbiol. Ecol. 25:33-41.

Baross, J.A., M. Summit, and J.F. Holden (1997) Is there a microbial biosphere in the subseafloor? JOI/USSAC Newsletter 10:8-11.

Butterfield, D.A., I.R. Jonasson, G.J. Massoth, R.A. Feely, K.K. Roe, R.E. Embley, J.F. Holden, R.E. McDuff, M.D. Lilley, and J.R. Delaney (1997) Seafloor eruptions and evolution of hydrothermal fluid chemistry. Phil. Trans. R. Soc. Lond. A 355:369-386.

Tunnicliffe, V., R.W. Embley, J.F. Holden, D.A. Butterfield, G.J. Massoth, S.K. Juniper (1997) Biological colonization of new hydrothermal vents following an eruption on Juan de Fuca Ridge. Deep-Sea Res. Part I 44:1627-1644.

Baross, J.A., and J.F. Holden (1996) Overview of hyperthermophiles and their heat-shock proteins. Adv. Prot. Chem. 48:1-34.

Holden, J.F., and J.A. Baross (1995) Enhanced thermotolerance by hydrostatic pressure in the deep-sea hyperthermophile Pyrococcus strain ES4. FEMS Microbiol. Ecol. 18:27-34.

Holden, J.F., and J.A. Baross (1993) Enhanced thermotolerance and temperature induced changes in protein composition in the hyperthermophilic archaeon ES4. J. Bacteriol. 175:2839-2843.