Journal Papers
- Caicedo, A. L. 2008. Geographic diversity cline of R gene homologs in wild populations of Solanum pimpinellifolium (Solanaceae). American Journal of Botany, 95: 393-398.
- Mather, K.A., A.L. Caicedo, N.R. Polato, K.M. Olsen, S. McCouch and M.D. Purugganan. 2007. The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics. 177: 2223–2232.
- Caicedo, A.L.*, S.H. Williamson*, R.D. Hernandez, A. Boyko, A. Fledel-Alon, T.L. York, N. Polato, K.M. Olsen, R. Nielsen, S. McCouch, C.D. Bustamante, and M.D. Purugganan. 2007. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genetics 3: e163. *shared authorship
- Olsen, K.M., A.L. Caicedo, and Y. Jia. 2007. Evolutionary genomics of weedy rice in the U.S.A. Journal of Integrative Plant Biology 49, 811-816.
- Korves, T.M., K.J. Schmid, A.L. Caicedo, C. Mays, J.R. Stinchcombe, M.D. Purugganan, and J. Schmitt. 2007. Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. American Naturalist 169, E141-E157.
- Olsen, K.M., A.L. Caicedo, N. Polato, A. McClung, S. McCouch, M.D. Purugganan. 2006. Selection under domestication: Evidence for a sweep in the rice Waxy genomic region. Genetics 173: 975-983.
- Stinchcombe, J.R., A.L. Caicedo, R. Hopkins, C. Mays, M.D. Purugganan, and J. Schmitt. 2005. Vernalization sensitivity in Arabidopsis thaliana: the effects of latitude and FLC variation. American Journal of Botany 92: 1701-1707.
- Caicedo, A.L. and M.D. Purugganan. 2005. Comparative plant genomics: frontiers and prospects. Plant Physiology 138: 545-547.
- Caicedo, A.L. and B.A. Schaal, 2004. Heterogeneous evolutionary processes affect R gene diversity in natural populations of Solanum pimpinellifolium. Proceedings of the National Academy of Sciences USA 101: 17444-17449.
- Caicedo, A.L., J.R. Stinchcombe, K.M. Olsen, J. Schmitt and M.D. Purugganan, 2004. Epistatic interaction between the Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait. Proceedings of the National Academy of Sciences USA 101: 15670-15675.
- Caicedo, A.L. and B.A. Schaal, 2004. Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene. Molecular Ecology 13: 1871-1882.
- Schaal, B.A., J.F. Gaskin, and A.L. Caicedo, 2003. Phylogeography, haplotype trees, and invasive plant species. Journal of Heredity 94: 197-204.
- Kover, P.X. and A.L. Caicedo, 2001. The genetic architecture of disease resistance in plants and the maintenance of recombination by parasites. Molecular Ecology 10: 1-16.
- Caicedo, A.L., B.A. Schaal, and B.N. Kunkel, 1999. Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana. Proceedings of the National Academy of Sciences USA 96: 302-306.
- Caicedo, A.L., E. Gaitan, M.C. Duque, O.Toro, D.G. Debouck, J.Tohme, 1999. AFLP fingerprinting of Phaseolus lunatus L. and related wild species from South America. Crop Science 39: 1497-1507.
Book Chapters
- Labate, J.A., S. Grandillo, T. Fulton, S. Muños, A.L. Caicedo, I. Peralta, Y. Ji, R.T. Chetelat, et al. (39 authors in total). 2007. Tomato. p.1-125. In C. Kole (ed.) Genome mapping and molecular breeding in plants: Volume 5 Vegetables. Springer Publishing Co., NY.
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