Chen, M and J.M. Lopes. 2007. Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae. Eukaryotic Cell. 6: 786-96.

Kaadige, M.R. and J.M. Lopes. 2006. Mutational analysis of the Opi1p repressor.  Current Genetics 49:30-38.

Hancock, L.C., Behta, R.P., and J.M. Lopes. 2006. Genomic analysis of the Opi- phenotype. Genetics. 173: 621-34.

Chen, M., Hancock, L.C., and J.M. Lopes. 2006. Transcriptional regulation of the phospholipid biosynthetic genes. Biochim. Biophys. Acta. 1771: 310-21.

Gardocki, M. E., Bakewell, M., Kamath, D., Robinson, K., Borovicka, K., and Lopes, J. M. (2005). Genomic analysis of PIS1 gene expression. Eukaryot Cell. 2005 Mar;4(3):604-14.

Gardocki, M. E., Jani, N. and J.M. Lopes. Phosphatidylinositol biosynthesis: biochemistry and regulation. Biochim Biophys Acta. 2005 Jul 15;1735(2):89-100.

Gardenour, K.R., Levy, J., and J.M. Lopes 2004. Identification of novel dominant INO2 c mutants with an Opi-phenotype. Mol. Microbiol. 52:1271-1280.

Gardocki, M.E. and J.M. Lopes. 2003. Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding dite. J. Biol. Chem. 278: 38646-38652.

Kaadige, M.R.  and J.M. Lopes.  2003.  Opi1p, Ume6p and Sin3p control expression from the promoter of the INO2 regulatory gene via a novel regulatory cascade.  Mol. Microbiol. 48: 823-832.

Eiznhamer, D.A., Ashburner, B.P., Jackson, J.C., Gardenour, K.R., and J.M. Lopes.  2001.  Expression of the INO2 regulatory gene of Saccharomyces cerevisiae is controlled by positive and negative promoter elements and an upstream open reading frame. Mol. Microbiol. 39: 1395-1405.

Robinson, K.A., Koepke, J.I., Kharodawala, M., and J.M. Lopes.  2000.  A network of yeast basic helix-loop-helix interactions. Nucl. Acids Res. 28: 4460-4466.

Elkhaimi, M, Kaadige, M.R., Kamath, D., Jackson J.C., Biliran, H. Jr., and J.M. Lopes.  2000.  Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6 , SIN3 , and RPD3 genes.  Nucl. Acids Res. 28:  3160-3167.

Robinson, K.A. and J.M. Lopes. 2000. The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter. J. Bacteriol. 182: 2746-2752.

Robinson, K.A. and J.M. Lopes. 2000. Saccharomyces cerevisiae basic helix-loop-helix proteins regulate diverse biological processes. Nucl. Acids Res. 28: 1499-1505.

Grauslund, M., Lopes, J.M., and B. RØnnow. 1999. Expression of GUT1 , which encodes glycerol kinase in Saccharomyces cerevisiae , is controlled by the positive regulators Adr1p, Ino2p and Ino4p and the negative regulator Opilp in a carbon source-dependent fashion. Nucl. Acids Res. 27: 4391-4398.

Anderson, M.S. and J.M. Lopes. 1996. Carbon source regulation of PIS1 gene expression in Saccharomyces cerevisiae involves the MCM1 gene and the two-component regulatory gene, SLN1. J. Biol. Chem. 271:26596-26601

Jackson, J.C. and J.M. Lopes. 1996. The yeast UME6 gene is required for both negative and positive transcriptional regulation of phospholipid biosynthetic gene expression. Nucl. Acids Res. 24:1322-1329.

Greenberg, M.L. and J.M. Lopes. 1996. Genetic regulation of phospholipid biosynthesis in yeast. Micro. Rev. 60: 1-20.

Ashburner, B.P. and J.M. Lopes. 1995. Regulation of yeast phospholipid biosynthetic gene expression in response to inositol involves two superimposed mechanisms. Proc. Natl. Acad. Sci. USA 92:9722-9726.

Ashburner, B.P. and J.M. Lopes. 1995. Autoregulated expression of the yeast INO2 and INO4 helix-loop-helix activator genes effects cooperative regulation on their target genes. Mol. Cell. Biol. 15:1709-1715.